For the full publucation list, see Yuan's Google Scholar.
- Yuan Zhang, Yanni Sun, and Jamse R. Cole. A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data. PLOS Computational Biology, 10(8): e1003737, 2014. (Paper)
- Yuan Zhang, Yanni Sun, and Jamse R. Cole. A Sensitive and Accurate protein domain cLassification Tool (SALT) for short reads, Bioinformatics, 29(17):2103-2111, 2013. (Paper)
- Yuan Zhang and Yanni Sun, PseudoDomain: identification of processed pseudogenes based on protein domain classification. ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB), 2012. (Paper)
- Yuan Zhang and Yanni Sun, MetaDomain: a profile HMM-based protein domain classification tool for short sequences. Pacific Symposium on Biocomputing (PSB), 2012. (Paper)
- Yuan Zhang and Yanni Sun, HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors. BMC Bioinformatics, 12(1): 198, 2011. (Paper)
- Zhongyuan Lai, Wenyu Liu and Yuan Zhang. Perceptual Relevance Measure for Generic Shape Coding, Data Compression Conference (DCC), 2009. (Paper)